Package de.uni_mannheim.informatik.dws.melt.matching_data

Class TrackRepository.Largebio.V2016

java.lang.Object

de.uni_mannheim.informatik.dws.melt.matching_data.TrackRepository.Largebio.V2016

Enclosing class:

TrackRepository.Largebio

public static class TrackRepository.Largebio.V2016
extends Object

2016 version of Large Biomedical Ontologies - these are also used for 2017 and 2018.

Field Summary

Fields

Modifier and Type	Field	Description
static Track	ALL	With the this benchmark all 6 largebio matching tasks are executed.
static Track	FMA_NCI_SMALL	Task 1: FMA-NCI small fragments: This task consists of matching two (relatively) small fragments of FMA and NCI.
static Track	FMA_NCI_WHOLE	Task 2: FMA-NCI whole ontologies.
static Track	FMA_SNOMED_SMALL	Task 3: FMA-SNOMED small fragments.
static Track	FMA_SNOMED_WHOLE	Task 4: FMA whole ontology.
static Track	ONLY_SMALL	Non official: Covers all SMALL test cases.
static Track	ONLY_WHOLE	Non official: Covers all WHOLE test cases.
static Track	SNOMED_NCI_SMALL	Task 5: SNOMED-NCI small fragments.
static Track	SNOMED_NCI_WHOLE	Task 6: NCI whole ontology with SNOMED large fragment.

Constructor Summary

Constructors

Constructor	Description
V2016()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

ALL

public static Track ALL

With the this benchmark all 6 largebio matching tasks are executed. For individual matching tasks refer to other benchmarks.

FMA_NCI_SMALL

public static Track FMA_NCI_SMALL

Task 1: FMA-NCI small fragments: This task consists of matching two (relatively) small fragments of FMA and NCI. The FMA fragment contains 3,696 classes (5% of FMA), while the NCI fragment contains 6,488 classes (10% of NCI). Together 10,184 classes

FMA_NCI_WHOLE

public static Track FMA_NCI_WHOLE

Task 2: FMA-NCI whole ontologies. This task consists of matching the whole FMA and NCI ontologies, which contains 78,989 and 66,724 classes, respectively. Together 145,713 classes

FMA_SNOMED_SMALL

public static Track FMA_SNOMED_SMALL

Task 3: FMA-SNOMED small fragments. This task consists of matching two (relatively) small fragments of FMA and SNOMED. The FMA fragment contains 10,157 classes (13% of FMA), while the SNOMED fragment contains 13,412 classes (5% of SNOMED). Together 23,569 classes

FMA_SNOMED_WHOLE

public static Track FMA_SNOMED_WHOLE

Task 4: FMA whole ontology. This task consists of matching the whole FMA that contains 78,989 classes with a large SNOMED fragment that contains 122,464 classes (40% of SNOMED). Together 201,453 classes.

SNOMED_NCI_SMALL

public static Track SNOMED_NCI_SMALL

Task 5: SNOMED-NCI small fragments. This task consists of matching two (relatively) small fragments of SNOMED and NCI. The SNOMED fragment contains 51,128 classes (17% of SNOMED), while the NCI fragment contains 23,958 classes (36% of NCI). Together 75,086 classes.

SNOMED_NCI_WHOLE

public static Track SNOMED_NCI_WHOLE

Task 6: NCI whole ontology with SNOMED large fragment. This task consists of matching the whole NCI that contains 66,724 classes with a large SNOMED fragment that contains 122,464 classes (40% of SNOMED). Together 189,188 classes.

ONLY_SMALL

public static Track ONLY_SMALL

Non official: Covers all SMALL test cases. This should not be used for multi source matchign because the source and target are subsets and the ontologies are not the same. This includes FMA_NCI, FMA_SNOMED, and SNOMED_NCI

ONLY_WHOLE

public static Track ONLY_WHOLE

Non official: Covers all WHOLE test cases. This includes FMA_NCI, FMA_SNOMED, and SNOMED_NCI

Constructor Details

V2016

public V2016()