Uses of Class
de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.Alignment

Packages that use Alignment

Package	Description
de.uni_mannheim.informatik.dws.melt.matching_data	This package contains the classes to support tracks and test cases.
de.uni_mannheim.informatik.dws.melt.matching_eval
de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator
de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cm
de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation
de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.ranking
de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.resultsSimilarity
de.uni_mannheim.informatik.dws.melt.matching_eval.matchers
de.uni_mannheim.informatik.dws.melt.matching_eval.multisource
de.uni_mannheim.informatik.dws.melt.matching_eval.paramtuning
de.uni_mannheim.informatik.dws.melt.matching_eval.refinement
de.uni_mannheim.informatik.dws.melt.matching_eval.util
de.uni_mannheim.informatik.dws.melt.matching_jena
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.elementlevel
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.elementlevel.scale
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.matcher	This package contains preconfigured matcher content that can be used in matching pipelines or as an example/reference for a new background-based matcher.
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.extraction	This package contains mapping extraction approaches as shown in Analyzing Mapping Extraction Approaches - C.
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.instancelevel
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.structurelevel
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.addnegatives
de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.wrapper
de.uni_mannheim.informatik.dws.melt.matching_jena.multisource
de.uni_mannheim.informatik.dws.melt.matching_ml.python
de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers
de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.relationprediction
de.uni_mannheim.informatik.dws.melt.matching_ml.python.openea
de.uni_mannheim.informatik.dws.melt.matching_ml.util
de.uni_mannheim.informatik.dws.melt.matching_owlapi
de.uni_mannheim.informatik.dws.melt.matching_owlapi_matchers
de.uni_mannheim.informatik.dws.melt.matching_owlapi_matchers.logmap
de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api
de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.typetransformation

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_data

Fields in de.uni_mannheim.informatik.dws.melt.matching_data declared as Alignment

Modifier and Type	Field	Description
private Alignment	TestCase.parsedEvaluationExclusionAlignment	The parsed version of the alignment of correspondences which should be removed from the matcher during evaluation.
private Alignment	TestCase.parsedInputAlignment	The parsed input alignment which is initialized lazily.
private Alignment	TestCase.parsedReference	The parsed reference which is initialized lazily.

Methods in de.uni_mannheim.informatik.dws.melt.matching_data that return Alignment

Modifier and Type	Method	Description
Alignment	TestCase.getParsedEvaluationExclusionAlignment()	Returns the parsed version of the alignment of correspondences which should be removed from the matcher during evaluation.
Alignment	TestCase.getParsedInputAlignment()	This method parses the input alignment and returns it.
Alignment	TestCase.getParsedReferenceAlignment()	This method parses the reference alignment and returns it.

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_eval

Fields in de.uni_mannheim.informatik.dws.melt.matching_eval declared as Alignment

Modifier and Type	Field	Description
private Alignment	ExecutionResult.referenceAlignment
private Alignment	ExecutionResult.systemAlignment

Methods in de.uni_mannheim.informatik.dws.melt.matching_eval that return Alignment

Modifier and Type	Method	Description
Alignment	ExecutionResult.getInputAlignment()	Returns the input alignment from the testcase for this execution result.
Alignment	ExecutionResult.getReferenceAlignment()
Alignment	ExecutionResult.getSystemAlignment()
private static Alignment	ExecutionResult.silentlyParseAlignment(URL url)	Helper method to parse an alignment from an URL and log a possible error.

Methods in de.uni_mannheim.informatik.dws.melt.matching_eval with parameters of type Alignment

Modifier and Type	Method	Description
void	ExecutionResult.setReferenceAlignment(Alignment referenceAlignment)	Deprecated. better create a new execution result.
void	ExecutionResult.setSystemAlignment(Alignment systemAlignment)	Deprecated. better create a new execution result.

Constructors in de.uni_mannheim.informatik.dws.melt.matching_eval with parameters of type Alignment

Modifier	Constructor	Description
	ExecutionResult(TestCase testCase, String matcherName, Alignment systemAlignment)	Constructor used by tests to check if metrics compute correctly.
	ExecutionResult(TestCase testCase, String matcherName, Alignment systemAlignment, Alignment referenceAlignment)	Constructor used by tests to check if metrics compute correctly.
	ExecutionResult(TestCase testCase, String matcherName, URL originalSystemAlignment, long runtime, Alignment systemAlignment, Alignment referenceAlignment, Object matcher, Set<Refiner> refinements, Object parameters)	Base constructor which needs all parameters
	ExecutionResult(ExecutionResult base, Alignment systemAlignment, Alignment referenceAlignment, Refiner refinement)	Copies all members except the mappings from the given execution result (like a copy constructor).

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator

Methods in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator that return types with arguments of type Alignment

Modifier and Type	Method	Description
private Map<Map.Entry<CorrespondenceRelation,CorrespondenceRelation>,Alignment>	EvaluatorRelationTypePrediction.getConfusionMap(ExecutionResult r)

Method parameters in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator with type arguments of type Alignment

Modifier and Type	Method	Description
private List<CorrespondenceRelation>	EvaluatorRelationTypePrediction.getRelationsFromCM(Map<Map.Entry<CorrespondenceRelation,CorrespondenceRelation>,Alignment> cm)

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cm

Fields in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cm declared as Alignment

Modifier and Type	Field	Description
protected Alignment	ConfusionMatrix.falseNegative
protected Alignment	ConfusionMatrix.falsePositive
protected Alignment	ConfusionMatrix.truePositive

Methods in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cm that return Alignment

Modifier and Type	Method	Description
Alignment	ConfusionMatrix.getFalseNegative()	Alignments which are correct but not found by the matcher
Alignment	ConfusionMatrix.getFalsePositive()	Alignments which are not correct but found by the matcher
Alignment	ConfusionMatrix.getTruePositive()	Alignments which are in the reference mapping and are also found by the matcher.

Methods in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cm with parameters of type Alignment

Modifier and Type	Method	Description
static ConfusionMatrix	ConfusionMatrixMetric.calculateConfusionMatrixFromMappings(Alignment truePositives, Alignment falsePositives, Alignment falseNegatives, int numberOfCorrespondences)	Calculation method which calculates the confusion matrix given three mappings: tp, fp, and fn.
ConfusionMatrix	ConfusionMatrixMetric.compute(Alignment referenceAlignment, Alignment systemAlignment, GoldStandardCompleteness gsCompleteness)
ConfusionMatrix	ConfusionMatrixMetric.compute(Alignment referenceAlignment, Alignment systemAlignment, GoldStandardCompleteness gsCompleteness, Alignment evaluationExclusionAlignment)
private ConfusionMatrix	ConfusionMatrixMetric.computeForCompleteGoldStandard(Alignment referenceAlignment, Alignment systemAlignment)	Calculate the confusion matrix under the premises that the gold standard is complete.
private ConfusionMatrix	ConfusionMatrixMetric.computeForPartialGoldStandard(Alignment referenceAlignment, Alignment systemAlignment, GoldStandardCompleteness gsCompleteness)	Calculate the confusion matrix under the premises that the gold standard is incomplete, i.e., partial.

Constructors in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cm with parameters of type Alignment

Modifier	Constructor	Description
	ConfusionMatrix(Alignment truePositive, Alignment falsePositive, Alignment falseNegative, double precision, double recall)	Constructor to fill confusion matrix.
	ConfusionMatrix(Alignment truePositive, Alignment falsePositive, Alignment falseNegative, int numberOfCorrespondences, double precision, double recall)	Constructor to fill confusion matrix.
	ConfusionMatrixMacroAveraged(Alignment truePositive, Alignment falsePositive, Alignment falseNegative, double precision, double recall, double fmeasure)
	ConfusionMatrixMacroAveraged(Alignment truePositive, Alignment falsePositive, Alignment falseNegative, int numberOfCorrespondences, double precision, double recall, double fmeasure)

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation

Fields in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation with type parameters of type Alignment

Modifier and Type	Field	Description
private Map<Map.Entry<CorrespondenceRelation,CorrespondenceRelation>,Alignment>	CMRelation.cm

Methods in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation that return Alignment

Modifier and Type	Method	Description
static Alignment	CMRelationMetric.enhanceAlignment(URI kgOne, URI kgTwo, URI alignment)
static Alignment	CMRelationMetric.enhanceAlignment(org.apache.jena.rdf.model.Model kgOne, org.apache.jena.rdf.model.Model kgTwo, Alignment alignment)

Methods in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation with parameters of type Alignment

Modifier and Type	Method	Description
static Alignment	CMRelationMetric.enhanceAlignment(org.apache.jena.rdf.model.Model kgOne, org.apache.jena.rdf.model.Model kgTwo, Alignment alignment)

Constructor parameters in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.cmrelation with type arguments of type Alignment

Modifier	Constructor	Description
	CMRelation(Map<Map.Entry<CorrespondenceRelation,CorrespondenceRelation>,Alignment> cm)

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.ranking

Methods in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.ranking that return Alignment

Modifier and Type	Method	Description
protected Alignment	RankingMetric.getSystemResultReducedToGoldStandardEntities(ExecutionResult executionResult)	Return the system alignment but only with correspondences where the source or the target appear also in the gold standard.

Methods in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.ranking with parameters of type Alignment

Modifier and Type	Method	Description
List<Correspondence>	SameConfidenceRanking.sortAlignment(Alignment systemAlignment, Alignment referenceAlignment)	Sorts the system alignment and returns a list of correspondences.

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.resultsSimilarity

Methods in de.uni_mannheim.informatik.dws.melt.matching_eval.evaluator.metric.resultsSimilarity with parameters of type Alignment

Modifier and Type	Method	Description
static double	MatcherSimilarityMetric.computeSimilarity(Alignment alignment_1, Alignment alignment_2)	Computes the Jaccard overlap between two alignments.

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_eval.matchers

Methods in de.uni_mannheim.informatik.dws.melt.matching_eval.matchers that return Alignment

Modifier and Type	Method	Description
Alignment	AddPositivesWithReference.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)

Methods in de.uni_mannheim.informatik.dws.melt.matching_eval.matchers with parameters of type Alignment

Modifier and Type	Method	Description
Alignment	AddPositivesWithReference.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_eval.multisource

Methods in de.uni_mannheim.informatik.dws.melt.matching_eval.multisource that return Alignment

Modifier and Type	Method	Description
static Alignment	ExecutorMultiSource.getCombinedInputAlignment(List<TestCase> testCases)
private static Alignment	EvaluatorMultiSourceBasic.loadAlignment(File matcherFolder)

Methods in de.uni_mannheim.informatik.dws.melt.matching_eval.multisource with parameters of type Alignment

Modifier and Type	Method	Description
static ExecutionResultMultiSource	ExecutorMultiSource.fromAlignment(Alignment fullAlignment, List<TestCase> testCases, String matcherName, long totalRuntime, boolean computeTransitiveClosure, Partitioner partitioner)

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_eval.paramtuning

Methods in de.uni_mannheim.informatik.dws.melt.matching_eval.paramtuning with parameters of type Alignment

Modifier and Type	Method	Description
static double	ConfidenceFinder.getBestConfidenceForFmeasure(Alignment reference, Alignment systemAlignment, GoldStandardCompleteness gsCompleteness)	If this method takes too long, you can use the more efficient method ConfidenceFinder.getBestConfidenceForFmeasure(Alignment, Alignment, GoldStandardCompleteness, int) and set a decimal precision (e.g.
static double	ConfidenceFinder.getBestConfidenceForFmeasure(Alignment reference, Alignment systemAlignment, GoldStandardCompleteness gsCompleteness, int decimalPrecision)	Given two alignments, this method determines the best cutting point (main confidence in correspondences) in order to optimize the F1-score.
static double	ConfidenceFinder.getBestConfidenceForFmeasureBeta(Alignment reference, Alignment systemAlignment, GoldStandardCompleteness gsCompleteness, double beta)	Given two alignments, this method determines the best cutting point (main confidence in correspondences) in order to optimize the F_beta-score (beta is given as a parameter).
static double	ConfidenceFinder.getBestConfidenceForPrecision(Alignment reference, Alignment systemAlignment, GoldStandardCompleteness gsCompleteness)	Given two alignments, this method determines the best cutting point (main confidence in correspondences) in order to optimize the precision.
static Set<Double>	ConfidenceFinder.getOccurringConfidences(Alignment a)
static Set<Double>	ConfidenceFinder.getOccurringConfidences(Alignment a, double begin, double end)
static Set<Double>	ConfidenceFinder.getOccurringConfidences(Alignment alignment, int decimalPrecision)	If you require a precise solution, set the decimalPrecision to a negative number.
static Set<Double>	ConfidenceFinder.getOccurringConfidences(Alignment a, int decimalPrecision, double begin, double end)

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_eval.refinement

Methods in de.uni_mannheim.informatik.dws.melt.matching_eval.refinement that return Alignment

Modifier and Type	Method	Description
static Alignment	AlignmentClosureRefiner.refineAlignment(org.apache.jena.rdf.model.Model kgOne, org.apache.jena.rdf.model.Model kgTwo, Alignment alignment)
Alignment	RelationTypeRefiner.refineMapping(Alignment originalAlignment)
Alignment	TypeRefiner.refineMapping(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment originalAlignment)	Perform the actual refinement.

Methods in de.uni_mannheim.informatik.dws.melt.matching_eval.refinement with parameters of type Alignment

Modifier and Type	Method	Description
static Alignment	AlignmentClosureRefiner.refineAlignment(org.apache.jena.rdf.model.Model kgOne, org.apache.jena.rdf.model.Model kgTwo, Alignment alignment)
Alignment	RelationTypeRefiner.refineMapping(Alignment originalAlignment)
Alignment	TypeRefiner.refineMapping(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment originalAlignment)	Perform the actual refinement.

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_eval.util

Fields in de.uni_mannheim.informatik.dws.melt.matching_eval.util with type parameters of type Alignment

Modifier and Type	Field	Description
private Map<String,Alignment>	ReferenceMatcher.map

Methods in de.uni_mannheim.informatik.dws.melt.matching_eval.util that return Alignment

Modifier and Type	Method	Description
Alignment	ReferenceMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)

Methods in de.uni_mannheim.informatik.dws.melt.matching_eval.util with parameters of type Alignment

Modifier and Type	Method	Description
Alignment	ReferenceMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_jena

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena that return Alignment

Modifier and Type	Method	Description
Alignment	MatcherPipelineYAAA.match(URL source, URL target, Alignment inputAlignment, Properties properties)
Alignment	MatcherPipelineYAAAJena.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	MatcherPipelineYAAAJenaConstructor.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
abstract Alignment	MatcherYAAA.match(URL source, URL target, Alignment inputAlignment, Properties properties)	Aligns two ontologies specified via URL, with an input alignment as Alignment object, and returns the mapping of the resulting alignment.
Alignment	MatcherYAAAJena.match(URL source, URL target, Alignment inputAlignment, Properties properties)
abstract Alignment	MatcherYAAAJena.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)	Aligns two ontologies specified via a Jena OntModel, with an input alignment as Alignment object, and returns the mapping of the resulting alignment.

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena with parameters of type Alignment

Modifier and Type	Method	Description
Alignment	MatcherPipelineYAAA.match(URL source, URL target, Alignment inputAlignment, Properties properties)
Alignment	MatcherPipelineYAAAJena.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	MatcherPipelineYAAAJenaConstructor.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
abstract Alignment	MatcherYAAA.match(URL source, URL target, Alignment inputAlignment, Properties properties)	Aligns two ontologies specified via URL, with an input alignment as Alignment object, and returns the mapping of the resulting alignment.
Alignment	MatcherYAAAJena.match(URL source, URL target, Alignment inputAlignment, Properties properties)
abstract Alignment	MatcherYAAAJena.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)	Aligns two ontologies specified via a Jena OntModel, with an input alignment as Alignment object, and returns the mapping of the resulting alignment.

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.elementlevel

Fields in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.elementlevel declared as Alignment

Modifier and Type	Field	Description
(package private) Alignment	BaselineStringMatcher.alignment

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.elementlevel that return Alignment

Modifier and Type	Method	Description
Alignment	BaselineStringMatcher.match(org.apache.jena.ontology.OntModel sourceOntology, org.apache.jena.ontology.OntModel targetOntology, Alignment alignment, Properties properties)
Alignment	HighPrecisionMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	StopwordExtraction.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	StringMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	SynonymTextMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.elementlevel with parameters of type Alignment

Modifier and Type	Method	Description
Alignment	BaselineStringMatcher.match(org.apache.jena.ontology.OntModel sourceOntology, org.apache.jena.ontology.OntModel targetOntology, Alignment alignment, Properties properties)
Alignment	HighPrecisionMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	StopwordExtraction.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	StringMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	SynonymTextMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
private void	HighPrecisionMatcher.matchResources(Iterator<? extends org.apache.jena.ontology.OntResource> sourceResources, Iterator<? extends org.apache.jena.ontology.OntResource> targetResources, Alignment alignment)
private void	StringMatcher.matchResources(org.apache.jena.util.iterator.ExtendedIterator<? extends org.apache.jena.ontology.OntResource> sourceResources, org.apache.jena.util.iterator.ExtendedIterator<? extends org.apache.jena.ontology.OntResource> targetResources, Alignment alignment)
private void	SynonymTextMatcher.matchResources(org.apache.jena.util.iterator.ExtendedIterator<? extends org.apache.jena.ontology.OntResource> sourceResources, org.apache.jena.util.iterator.ExtendedIterator<? extends org.apache.jena.ontology.OntResource> targetResources, Alignment alignment)

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.elementlevel.scale

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.elementlevel.scale that return Alignment

Modifier and Type	Method	Description
Alignment	ScalableStringProcessingMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.elementlevel.scale with parameters of type Alignment

Modifier and Type	Method	Description
Alignment	ScalableStringProcessingMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
void	ScalableStringProcessingMatcher.matchResources(Iterator<? extends org.apache.jena.rdf.model.Resource> sourceResources, Iterator<? extends org.apache.jena.rdf.model.Resource> targetResources, Alignment alignment)

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.matcher

Fields in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.matcher declared as Alignment

Modifier and Type	Field	Description
private Alignment	BackgroundMatcher.alignment	Alignment
private Alignment	SimpleStringMatcher.mapping	Alignment

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.matcher that return Alignment

Modifier and Type	Method	Description
Alignment	BackgroundMatcher.match(org.apache.jena.ontology.OntModel sourceOntology, org.apache.jena.ontology.OntModel targetOntology, Alignment inputAlignment, Properties p)
Alignment	BackgroundMatcherStandAlone.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	SimpleStringMatcher.match(org.apache.jena.ontology.OntModel sourceOntology, org.apache.jena.ontology.OntModel targetOntology, Alignment inputAlignment, Properties p)

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.external.matcher with parameters of type Alignment

Modifier and Type	Method	Description
private void	SimpleStringMatcher.initializeMappingProcess(Alignment inputAlignment)	(Re-)initialize data structures.
Alignment	BackgroundMatcher.match(org.apache.jena.ontology.OntModel sourceOntology, org.apache.jena.ontology.OntModel targetOntology, Alignment inputAlignment, Properties p)
Alignment	BackgroundMatcherStandAlone.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	SimpleStringMatcher.match(org.apache.jena.ontology.OntModel sourceOntology, org.apache.jena.ontology.OntModel targetOntology, Alignment inputAlignment, Properties p)

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter that return Alignment

Modifier and Type	Method	Description
static Alignment	AdditionalConfidenceFilter.filter(Alignment alignment, String additionalConfidenceKey, double threshold)	Filters the given alignment such that in the returned alignment, only correspondences appear where the additional confidence (provided by the key) is greater or equal to the given threshold.
static Alignment	AnonymousNodeFilter.filter(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment)	Filters the alignment based on similar hosts.
static Alignment	BadHostsFilter.filter(String expectedSourceHost, String expectedTargetHost, Alignment inputAlignment, boolean strict)	Filters the alignment based on similar hosts.
static Alignment	BadHostsFilter.filter(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment)	Filters the alignment based on similar hosts in a non strict mode (if the host of source or target in a correspondence can not be determined, then the correspondence is added to the filtered alignment).
static Alignment	BadHostsFilter.filter(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, boolean strict)	Filters the alignment based on similar hosts.
static Alignment	BadHostsFilter.filter(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, boolean strict, Function<org.apache.jena.ontology.OntModel,String> hostOfModelFunction)	Filters the alignment based on similar hosts.
static Alignment	CardinalityFilter.filter(Alignment inputAlignment)	Deprecated.
static Alignment	ConfidenceCurvatureFilter.filter(Alignment inputAlignment, MeltCurvature curvature)
static Alignment	ConfidenceCurvatureFilter.filter(Alignment inputAlignment, MeltCurvature curvature, String additionalConfidenceKey)
Alignment	ConfidenceFilter.filter(Alignment inputAlignment, org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target)
static Alignment	NtoMCorrespondenceFilter.filter(Alignment alignment)
Alignment	TopXFilter.filter(Alignment alignment)	Filters the given alignment such that there are only the top X correspondences (according to confidence) for every source node.
private Alignment	TopXFilter.filterTopX(Iterator<Correspondence> iterator)
Alignment	AdditionalConfidenceFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	AnonymousNodeFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	BadHostsFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	CardinalityFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties p)	Deprecated.
Alignment	ConfidenceCurvatureFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties p)
Alignment	ConfidenceFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	MixedTypFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	NtoMCorrespondenceFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	ReflexiveCorrespondenceFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	TopXFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	TypeFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
static Alignment	ReflexiveCorrespondenceFilter.removeReflexiveCorrespondences(Alignment alignment)	Removes all reflexive edges (which maps A to A) from an alignment.

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter with parameters of type Alignment

Modifier and Type	Method	Description
static Alignment	AdditionalConfidenceFilter.filter(Alignment alignment, String additionalConfidenceKey, double threshold)	Filters the given alignment such that in the returned alignment, only correspondences appear where the additional confidence (provided by the key) is greater or equal to the given threshold.
static Alignment	AnonymousNodeFilter.filter(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment)	Filters the alignment based on similar hosts.
static Alignment	BadHostsFilter.filter(String expectedSourceHost, String expectedTargetHost, Alignment inputAlignment, boolean strict)	Filters the alignment based on similar hosts.
static Alignment	BadHostsFilter.filter(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment)	Filters the alignment based on similar hosts in a non strict mode (if the host of source or target in a correspondence can not be determined, then the correspondence is added to the filtered alignment).
static Alignment	BadHostsFilter.filter(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, boolean strict)	Filters the alignment based on similar hosts.
static Alignment	BadHostsFilter.filter(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, boolean strict, Function<org.apache.jena.ontology.OntModel,String> hostOfModelFunction)	Filters the alignment based on similar hosts.
static Alignment	CardinalityFilter.filter(Alignment inputAlignment)	Deprecated.
static Alignment	ConfidenceCurvatureFilter.filter(Alignment inputAlignment, MeltCurvature curvature)
static Alignment	ConfidenceCurvatureFilter.filter(Alignment inputAlignment, MeltCurvature curvature, String additionalConfidenceKey)
Alignment	ConfidenceFilter.filter(Alignment inputAlignment, org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target)
static Alignment	NtoMCorrespondenceFilter.filter(Alignment alignment)
Alignment	TopXFilter.filter(Alignment alignment)	Filters the given alignment such that there are only the top X correspondences (according to confidence) for every source node.
private static double[]	ConfidenceCurvatureFilter.getSortedConfidences(Alignment alignment)
private static double[]	ConfidenceCurvatureFilter.getSortedConfidences(Alignment alignment, String additionalConfidenceKey)
static double	ConfidenceCurvatureFilter.getThreshold(Alignment inputAlignment, MeltCurvature curvature)
static double	ConfidenceCurvatureFilter.getThreshold(Alignment inputAlignment, MeltCurvature curvature, String additionalConfidenceKey)
Alignment	AdditionalConfidenceFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	AnonymousNodeFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	BadHostsFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	CardinalityFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties p)	Deprecated.
Alignment	ConfidenceCurvatureFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties p)
Alignment	ConfidenceFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	MixedTypFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	NtoMCorrespondenceFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	ReflexiveCorrespondenceFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	TopXFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	TypeFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
static Alignment	ReflexiveCorrespondenceFilter.removeReflexiveCorrespondences(Alignment alignment)	Removes all reflexive edges (which maps A to A) from an alignment.

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.extraction

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.extraction that return Alignment

Modifier and Type	Method	Description
static Alignment	HungarianExtractor.filter(Alignment inputAlignment)
static Alignment	MaxWeightBipartiteExtractor.filter(Alignment inputAlignment)
static Alignment	MaxWeightBipartiteExtractor.filter(Alignment inputAlignment, MwbInitHeuristic heuristic)
static Alignment	MaxWeightBipartiteExtractor.filter(Alignment inputAlignment, MwbInitHeuristic heuristic, int multiplier)	Filters the alignment by computing a maximal one to one alignment.
static Alignment	NaiveAscendingExtractor.filter(Alignment inputAlignment)
static Alignment	NaiveDescendingExtractor.filter(Alignment inputAlignment)
Alignment	HungarianExtractor.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	MaxWeightBipartiteExtractor.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	NaiveAscendingExtractor.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties p)
Alignment	NaiveDescendingExtractor.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties p)

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.extraction with parameters of type Alignment

Modifier and Type	Method	Description
static Alignment	HungarianExtractor.filter(Alignment inputAlignment)
static Alignment	MaxWeightBipartiteExtractor.filter(Alignment inputAlignment)
static Alignment	MaxWeightBipartiteExtractor.filter(Alignment inputAlignment, MwbInitHeuristic heuristic)
static Alignment	MaxWeightBipartiteExtractor.filter(Alignment inputAlignment, MwbInitHeuristic heuristic, int multiplier)	Filters the alignment by computing a maximal one to one alignment.
static Alignment	NaiveAscendingExtractor.filter(Alignment inputAlignment)
static Alignment	NaiveDescendingExtractor.filter(Alignment inputAlignment)
Alignment	HungarianExtractor.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	MaxWeightBipartiteExtractor.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	NaiveAscendingExtractor.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties p)
Alignment	NaiveDescendingExtractor.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties p)

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance that return Alignment

Modifier and Type	Method	Description
Alignment	CommonPropertiesFilter.filter(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment)
Alignment	BagOfWordsSetSimilarityFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	CommonPropertiesFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	SimilarHierarchyFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	SimilarNeighboursFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	SimilarTypeFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.filter.instance with parameters of type Alignment

Modifier and Type	Method	Description
Alignment	CommonPropertiesFilter.filter(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment)
Alignment	BagOfWordsSetSimilarityFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	CommonPropertiesFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	SimilarHierarchyFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	SimilarNeighboursFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	SimilarTypeFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
static double	CommonPropertiesFilter.sharedProperties(org.apache.jena.ontology.Individual individualSource, org.apache.jena.ontology.Individual individualTarget, Alignment inputAlignment, boolean excludeSameURIMapping, double minPropertyConfidence, SetSimilarity setComparator)	Return the number of overlapping distinct properties.

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.instancelevel

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.instancelevel that return Alignment

Modifier and Type	Method	Description
Alignment	MatchClassBasedOnInstances.getClassMatches(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment)
Alignment	MatchPropBasedOnInstances.getPropertyAlignment(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment)
Alignment	MatchClassBasedOnInstances.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	MatchPropBasedOnInstances.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.instancelevel with parameters of type Alignment

Modifier and Type	Method	Description
Alignment	MatchClassBasedOnInstances.getClassMatches(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment)
Alignment	MatchPropBasedOnInstances.getPropertyAlignment(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment)
Alignment	MatchClassBasedOnInstances.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	MatchPropBasedOnInstances.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel

Fields in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel declared as Alignment

Modifier and Type	Field	Description
Alignment	AddAlignmentMatcher.alignmentToBeUsed	Alignment to be added.
Alignment	ForwardAlwaysMatcher.alignmentToBeUsed	Alignment to be returned.
Alignment	ForwardMatcher.alignmentToBeUsed	Alignment to be returned.

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel that return Alignment

Modifier and Type	Method	Description
Alignment	MachineLearningWEKAFilter.applyModel(File model, Alignment alignment)
Alignment	ConfidenceCombiner.combine(Alignment alignment)
static Alignment	TrainingAlignmentGenerator.getTrainingAlignment(Alignment recallAlignment, Alignment referenceAlignment)	Deprecated. This method returns a training alignment based on a recall alignment and a reference alignment.
Alignment	AddAlignmentExtensions.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	AddAlignmentMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	AdditionalConfidenceByFunction.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	AlignmentSaveMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	ConfidenceCombiner.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	FileSaveMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	ForwardAlwaysMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	ForwardMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	MachineLearningWEKAFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	NoOpMatcher.match(URL source, URL target, Alignment inputAlignment, Properties properties)
Alignment	ScaleAdditionalConfidence.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	ScaleConfidence.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	TrainingAlignmentGenerator.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties parameters)	Deprecated.
static Alignment	ScaleAdditionalConfidence.scale(Alignment alignment)	Scales all additional confidence values (separately) between zero and one.
static Alignment	ScaleAdditionalConfidence.scale(Alignment alignment, double newMin, double newMax, Set<String> keys)	Scales the additional confidence values of the provides keys (separately) between newMin and newMax.
static Alignment	ScaleAdditionalConfidence.scale(Alignment alignment, Set<String> keys)	Scales the additional confidence values (separately) of the provides keys between zero and one.
static Alignment	ScaleConfidence.scale(Alignment alignment)
static Alignment	ScaleConfidence.scale(Alignment alignment, double newMin, double newMax)

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel with parameters of type Alignment

Modifier and Type	Method	Description
Alignment	MachineLearningWEKAFilter.applyModel(File model, Alignment alignment)
Alignment	ConfidenceCombiner.combine(Alignment alignment)
static Alignment	TrainingAlignmentGenerator.getTrainingAlignment(Alignment recallAlignment, Alignment referenceAlignment)	Deprecated. This method returns a training alignment based on a recall alignment and a reference alignment.
weka.core.Instances	MachineLearningWEKAFilter.getTrainingInstances(Alignment alignment)	Generates the weka instances which can be used for training a model .
Alignment	AddAlignmentExtensions.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	AddAlignmentMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	AdditionalConfidenceByFunction.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	AlignmentSaveMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	ConfidenceCombiner.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	FileSaveMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	ForwardAlwaysMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	ForwardMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	MachineLearningWEKAFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	NoOpMatcher.match(URL source, URL target, Alignment inputAlignment, Properties properties)
Alignment	ScaleAdditionalConfidence.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	ScaleConfidence.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	TrainingAlignmentGenerator.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties parameters)	Deprecated.
static Alignment	ScaleAdditionalConfidence.scale(Alignment alignment)	Scales all additional confidence values (separately) between zero and one.
static Alignment	ScaleAdditionalConfidence.scale(Alignment alignment, double newMin, double newMax, Set<String> keys)	Scales the additional confidence values of the provides keys (separately) between newMin and newMax.
static Alignment	ScaleAdditionalConfidence.scale(Alignment alignment, Set<String> keys)	Scales the additional confidence values (separately) of the provides keys between zero and one.
static Alignment	ScaleConfidence.scale(Alignment alignment)
static Alignment	ScaleConfidence.scale(Alignment alignment, double newMin, double newMax)
File	MachineLearningWEKAFilter.trainModel(Alignment trainingAlignment)

Constructors in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.metalevel with parameters of type Alignment

Modifier	Constructor	Description
	AddAlignmentMatcher(Alignment alignmentToBeUsed)	Constructor
	ForwardAlwaysMatcher(Alignment alignmentToBeUsed)	Constructor
	ForwardMatcher(Alignment alignmentToBeUsed)	Constructor
	MachineLearningWEKAFilter(Alignment trainingAlignment)
	MachineLearningWEKAFilter(Alignment trainingAlignment, int crossValidationNumber, int numberOfParallelJobs)

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering that return Alignment

Modifier and Type	Method	Description
Alignment	FilterByErrorDegree.addConfidence(Alignment alignment)
static <T> Alignment	ClusterUtil.addCorrespondencesMultiCluster(Alignment alignment, Map<String,Set<T>> uriToClusterId)	This function adds correspondences from the alignment where the source and target are in the same cluster.
Alignment	FilterByErrorDegree.filter(Alignment alignment)
Alignment	FamerClustering.match(List<Object> models, Alignment inputAlignment, Object parameters)
Alignment	FilterByErrorDegree.match(List<Object> models, Alignment inputAlignment, Object parameters)
Alignment	FamerClustering.processAlignment(Alignment inputAlignment)
static <T> Alignment	ClusterUtil.removeCorrespondences(Alignment alignment, Map<String,T> uriToClusterId)	This function removes correspondences from the alignment where the two matched entities are not in the same cluster.
static <T> Alignment	ClusterUtil.removeCorrespondencesMultiCluster(Alignment alignment, Map<String,Set<T>> uriToClusterId)	This function removes correspondences from the alignment where the two matched entities are not in the same cluster.

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.clustering with parameters of type Alignment

Modifier and Type	Method	Description
Alignment	FilterByErrorDegree.addConfidence(Alignment alignment)
static <T> Alignment	ClusterUtil.addCorrespondencesMultiCluster(Alignment alignment, Map<String,Set<T>> uriToClusterId)	This function adds correspondences from the alignment where the source and target are in the same cluster.
void	FilterByErrorDegree.analyzeErrDistribution(Alignment alignment, File file)	Write a tsv file which contains the err value in the first column and the number of correspondences with this value as a second column.
Alignment	FilterByErrorDegree.filter(Alignment alignment)
static Map<String,Set<Long>>	FamerClustering.getClusters(Alignment alignment, org.gradoop.famer.clustering.parallelClustering.AbstractParallelClustering clusteringAlgorithm, DatasetIDExtractor datsetIdExtractor)	Computes a map between uris and correspoding clusterId.
static Map<String,Set<Long>>	FamerClustering.getClusters(Alignment alignment, org.gradoop.famer.clustering.parallelClustering.AbstractParallelClustering clusteringAlgorithm, DatasetIDExtractor datsetIdExtractor, int parallelism)	Computes a map between uris and correspoding clusterId.
private static LogicalGraphAndSourceIds	FamerClustering.getLogicalGraphFromAlignment(Alignment a, DatasetIDExtractor datsetIdExtractor, int parallelism)
Alignment	FamerClustering.match(List<Object> models, Alignment inputAlignment, Object parameters)
Alignment	FilterByErrorDegree.match(List<Object> models, Alignment inputAlignment, Object parameters)
Alignment	FamerClustering.processAlignment(Alignment inputAlignment)
static <T> Alignment	ClusterUtil.removeCorrespondences(Alignment alignment, Map<String,T> uriToClusterId)	This function removes correspondences from the alignment where the two matched entities are not in the same cluster.
static <T> Alignment	ClusterUtil.removeCorrespondencesMultiCluster(Alignment alignment, Map<String,Set<T>> uriToClusterId)	This function removes correspondences from the alignment where the two matched entities are not in the same cluster.

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers

Fields in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers declared as Alignment

Modifier and Type	Field	Description
private Alignment	MergeResult.alignment

Fields in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers with type parameters of type Alignment

Modifier and Type	Field	Description
private Map<Map.Entry<String,String>,Alignment>	MultiSourceDispatcherIncrementalMerge.goldStandard
private List<Alignment>	MultiSourceDispatcherIncrementalMerge.intermediateAlignments

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers that return Alignment

Modifier and Type	Method	Description
Alignment	MergeResult.getAlignment()

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers that return types with arguments of type Alignment

Modifier and Type	Method	Description
List<Alignment>	MultiSourceDispatcherIncrementalMerge.getIntermediateAlignments()	Returns the intermediate alignments.

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers with parameters of type Alignment

Modifier and Type	Method	Description
private static org.apache.jena.graph.Node	MergeExecutor.getNode(Alignment alignment, org.apache.jena.graph.Node node)
private static NodeAndReplaced	MergeExecutor.getNodeAndReplaced(Alignment alignment, org.apache.jena.graph.Node node)
static void	MergeExecutor.mergeSourceIntoTarget(org.apache.jena.rdf.model.Model source, org.apache.jena.rdf.model.Model target, Alignment alignment, boolean addInformationToUnion)	Merges all triples from the source model into the target model.
private static void	MergeExecutor.mergeSourceIntoTargetFullInformation(org.apache.jena.rdf.model.Model source, org.apache.jena.rdf.model.Model target, Alignment alignment)
private static void	MergeExecutor.mergeSourceIntoTargetPartialInformation(org.apache.jena.rdf.model.Model source, org.apache.jena.rdf.model.Model target, Alignment alignment)
void	MultiSourceDispatcherIncrementalMerge.setGoldStandard(Alignment alignment, DatasetIDExtractor idExtractor)

Constructors in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.multisource.dispatchers with parameters of type Alignment

Modifier	Constructor	Description
	MergeResult(int newPos, Set<Object> result, Alignment alignment)

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.structurelevel

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.structurelevel that return Alignment

Modifier and Type	Method	Description
Alignment	MatchPropBasedOnClass.getPropertyMatches(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment)
Alignment	BoundedPathMatching.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	MatchPropBasedOnClass.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.structurelevel with parameters of type Alignment

Modifier and Type	Method	Description
Alignment	MatchPropBasedOnClass.getPropertyMatches(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment)
Alignment	BoundedPathMatching.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	MatchPropBasedOnClass.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.addnegatives

Fields in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.addnegatives declared as Alignment

Modifier and Type	Field	Description
private Alignment	AddNegativesViaAlignment.recallAlignment

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.addnegatives that return Alignment

Modifier and Type	Method	Description
static Alignment	AddNegativesViaAlignment.addNegatives(Alignment recallAlignment, Alignment referenceAlignment)	This method returns a training alignment based on a recall alignment and a reference alignment.
static Alignment	AddNegativesViaMatcher.addNegatives(Alignment recallAlignment, Alignment referenceAlignment)	This method returns a training alignment based on a recall alignment and a reference alignment.
Alignment	AddNegativesViaAlignment.getRecallAlignment()
Alignment	AddNegativesRandomlyAbsolute.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties parameters)
Alignment	AddNegativesRandomlyOneOneAssumption.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties parameters)
Alignment	AddNegativesRandomlyShare.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties parameters)
Alignment	AddNegativesViaAlignment.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties parameters)
Alignment	AddNegativesViaMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties parameters)

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.addnegatives with parameters of type Alignment

Modifier and Type	Method	Description
static Alignment	AddNegativesViaAlignment.addNegatives(Alignment recallAlignment, Alignment referenceAlignment)	This method returns a training alignment based on a recall alignment and a reference alignment.
static Alignment	AddNegativesViaMatcher.addNegatives(Alignment recallAlignment, Alignment referenceAlignment)	This method returns a training alignment based on a recall alignment and a reference alignment.
Alignment	AddNegativesRandomlyAbsolute.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties parameters)
Alignment	AddNegativesRandomlyOneOneAssumption.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties parameters)
Alignment	AddNegativesRandomlyShare.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties parameters)
Alignment	AddNegativesViaAlignment.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties parameters)
Alignment	AddNegativesViaMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties parameters)
void	AddNegativesViaAlignment.setRecallAlignment(Alignment recallAlignment)

Constructors in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.util.addnegatives with parameters of type Alignment

Modifier	Constructor	Description
	AddNegativesViaAlignment(Alignment recallAlignment)	Constructor with requires the recall alignment.

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.wrapper

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.wrapper that return Alignment

Modifier and Type	Method	Description
private Alignment	ParisMatcher.findEquivalence(Alignment directionOne, Alignment directionTwo)
private Alignment	ParisMatcher.getAlignment(File outputFolder)
private Alignment	ParisMatcher.getAlignmentHighestIteration(List<File> files)
Alignment	ParisMatcher.match(URL source, URL target, Alignment inputAlignment, Properties properties)
Alignment	ParisMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	UriInterfaceWrapper.match(URL source, URL target, Alignment inputAlignment, Properties parameters)

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena_matchers.wrapper with parameters of type Alignment

Modifier and Type	Method	Description
private Alignment	ParisMatcher.findEquivalence(Alignment directionOne, Alignment directionTwo)
Alignment	ParisMatcher.match(URL source, URL target, Alignment inputAlignment, Properties properties)
Alignment	ParisMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	UriInterfaceWrapper.match(URL source, URL target, Alignment inputAlignment, Properties parameters)

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_jena.multisource

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena.multisource that return Alignment

Modifier and Type	Method	Description
abstract Alignment	MatcherMultiSourceYAAAJena.match(List<org.apache.jena.ontology.OntModel> graphs, Alignment inpuAlignment, Properties parameters)

Methods in de.uni_mannheim.informatik.dws.melt.matching_jena.multisource with parameters of type Alignment

Modifier and Type	Method	Description
abstract Alignment	MatcherMultiSourceYAAAJena.match(List<org.apache.jena.ontology.OntModel> graphs, Alignment inpuAlignment, Properties parameters)

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_ml.python

Methods in de.uni_mannheim.informatik.dws.melt.matching_ml.python that return Alignment

Modifier and Type	Method	Description
Alignment	PythonServer.alignModel(String vectorPathSource, String vectorPathTarget, String function, Alignment alignment)	Align two knowledge graph embeddings
static Alignment	MachineLearningScikitFilter.applyStoredMLModel(File modelFile, Alignment predictAlignment, List<String> confidenceNames)	Load a machine learning model from a file (trained/generated with trainAndStoreMLModel) and apply it to the alignment which is then filtered.
private static Alignment	MachineLearningScikitFilter.filterAlignment(Alignment fullAlignment, List<Correspondence> orderedAlignment, List<Integer> predictions)
Alignment	Doc2vecModelMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	MachineLearningScikitFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	VectorSpaceModelMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
private Alignment	PythonServer.parseJSON(String resultString)
Alignment	PythonServer.queryVectorSpaceModel(String modelPath, Alignment alignment)	Method to query a vector space model (which has to be trained with trainVectorSpaceModel) in a batch mode.
Alignment	PythonServer.sentenceTransformersPrediction(SentenceTransformersMatcher matcher, File corpusFile, File queriesFile)	Run sentence transformers prediction.
static Alignment	MachineLearningScikitFilter.trainAndApplyMLModel(Alignment trainAlignment, Alignment predictAlignment, List<String> confidenceNames, int crossValidationNumber, int numberOfParallelJobs)	Trains a machine learning model in python and applies it to the predictAlignment to filter it.

Methods in de.uni_mannheim.informatik.dws.melt.matching_ml.python with parameters of type Alignment

Modifier and Type	Method	Description
Alignment	PythonServer.alignModel(String vectorPathSource, String vectorPathTarget, String function, Alignment alignment)	Align two knowledge graph embeddings
static Alignment	MachineLearningScikitFilter.applyStoredMLModel(File modelFile, Alignment predictAlignment, List<String> confidenceNames)	Load a machine learning model from a file (trained/generated with trainAndStoreMLModel) and apply it to the alignment which is then filtered.
private static Alignment	MachineLearningScikitFilter.filterAlignment(Alignment fullAlignment, List<Correspondence> orderedAlignment, List<Integer> predictions)
Alignment	Doc2vecModelMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	MachineLearningScikitFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	VectorSpaceModelMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	PythonServer.queryVectorSpaceModel(String modelPath, Alignment alignment)	Method to query a vector space model (which has to be trained with trainVectorSpaceModel) in a batch mode.
static Alignment	MachineLearningScikitFilter.trainAndApplyMLModel(Alignment trainAlignment, Alignment predictAlignment, List<String> confidenceNames, int crossValidationNumber, int numberOfParallelJobs)	Trains a machine learning model in python and applies it to the predictAlignment to filter it.
static List<String>	MachineLearningScikitFilter.trainAndStoreMLModel(Alignment alignment, File modelFile, List<String> confidenceNames, int crossValidationNumber, int numberOfParallelJobs)	Trains a machine learning model in python based on the given alignment and then stores the best model in a file.
private void	Doc2vecModelMatcher.updateConfidences(PythonServer pythonServer, String modelName, Alignment inputAlignment)
private void	VectorSpaceModelMatcher.updateConfidences(PythonServer pythonServer, String modelName, Alignment inputAlignment)

Constructors in de.uni_mannheim.informatik.dws.melt.matching_ml.python with parameters of type Alignment

Modifier	Constructor	Description
	MachineLearningScikitFilter(Alignment trainingAlignment)
	MachineLearningScikitFilter(Alignment trainingAlignment, int crossValidationNumber, int numberOfParallelJobs)

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers

Methods in de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers that return Alignment

Modifier and Type	Method	Description
Alignment	LLMBinaryFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	LLMChooseGivenEntityFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	SentenceTransformersMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties parameters)
Alignment	TransformersBaseFineTuner.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)	This method does only fine tune the model and does not match any entities.
Alignment	TransformersFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)

Methods in de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers with parameters of type Alignment

Modifier and Type	Method	Description
Map<Correspondence,List<Integer>>	LLMBinaryFilter.createPredictionFile(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment predictionAlignment, File outputFile, boolean append)	Create the prediction file which is a CSV file with two columns.The first column is the text from the left resource and the second column is the text from the right resource.
Map<Correspondence,List<Integer>>	TransformersFilter.createPredictionFile(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment predictionAlignment, File outputFile, boolean append)	Create the prediction file which is a CSV file with two columns.The first column is the text from the left resource and the second column is the text from the right resource.
File	TransformersBaseFineTuner.createTrainingFile(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment trainingAlignment)	Creates a new file and writes all correspondences as textual data to it.
void	SentenceTransformersPredicate.init(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties parameters)
void	SentenceTransformersPredicateInputAlignment.init(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties parameters)
Alignment	LLMBinaryFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	LLMChooseGivenEntityFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
Alignment	SentenceTransformersMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties parameters)
Alignment	TransformersBaseFineTuner.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)	This method does only fine tune the model and does not match any entities.
Alignment	TransformersFilter.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
protected int	TransformersBaseFineTuner.writeClassificationFormat(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment trainingAlignment, File trainFile, boolean append)
int	SentenceTransformersFineTuner.writeTrainingFile(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment trainingAlignment, File trainFile, boolean append)	Writes the correspondences to a file (append or not can be chosen by a parameter).
int	TransformersBaseFineTuner.writeTrainingFile(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment trainingAlignment, File trainFile, boolean append)	Writes the correspondences to a file (append or not can be chosen by a parameter).
private int	SentenceTransformersFineTuner.writeTripletFormat(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment trainingAlignment, File trainFile, boolean append)

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.relationprediction

Methods in de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.relationprediction that return Alignment

Modifier and Type	Method	Description
Alignment	RelationTypePredictor.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)

Methods in de.uni_mannheim.informatik.dws.melt.matching_ml.python.nlptransformers.relationprediction with parameters of type Alignment

Modifier and Type	Method	Description
Map<Correspondence,List<Integer>>	RelationTypePredictor.createPredictionFile(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment predictionAlignment, File outputFile, boolean append)
Map<Correspondence,List<Integer>>	RelationTypePredictor.createPredictionFile(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment predictionAlignment, File outputFile, boolean append, boolean requiresSwitchExmaples)
Alignment	RelationTypePredictor.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties properties)
int	RelationTypeFineTuner.writeTrainingFile(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment trainingAlignment, File trainFile, boolean append)

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_ml.python.openea

Methods in de.uni_mannheim.informatik.dws.melt.matching_ml.python.openea that return Alignment

Modifier and Type	Method	Description
Alignment	OpenEAMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties parameter)

Methods in de.uni_mannheim.informatik.dws.melt.matching_ml.python.openea with parameters of type Alignment

Modifier and Type	Method	Description
Alignment	OpenEAMatcher.match(org.apache.jena.ontology.OntModel source, org.apache.jena.ontology.OntModel target, Alignment inputAlignment, Properties parameter)
protected void	OpenEAMatcher.writeTrainValAlignments(Alignment a, File alignmentFolder)

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_ml.util

Fields in de.uni_mannheim.informatik.dws.melt.matching_ml.util declared as Alignment

Modifier and Type	Field	Description
private Alignment	TrainTestSplitAlignment.test
private Alignment	TrainTestSplitAlignment.train

Methods in de.uni_mannheim.informatik.dws.melt.matching_ml.util that return Alignment

Modifier and Type	Method	Description
Alignment	TrainTestSplitAlignment.getTest()	Returns the test alignment.
Alignment	TrainTestSplitAlignment.getTrain()	Returns the training alignment.

Methods in de.uni_mannheim.informatik.dws.melt.matching_ml.util with parameters of type Alignment

Modifier and Type	Method	Description
private void	TrainTestSplitAlignment.initializeTrainTest(Alignment alignment, TrainTestSplit<Correspondence> split)

Constructors in de.uni_mannheim.informatik.dws.melt.matching_ml.util with parameters of type Alignment

Modifier	Constructor	Description
	TrainTestSplitAlignment(Alignment alignment, double train_ratio)
	TrainTestSplitAlignment(Alignment alignment, double train_ratio, long seed)
	TrainTestSplitAlignment(Alignment alignment, double train_ratio, long seed, Function<Correspondence,?> stratify)
	TrainTestSplitAlignment(Alignment alignment, double train_ratio, Function<Correspondence,?> stratify)
	TrainTestSplitAlignment(Alignment alignment, double train_ratio, Random rnd)
	TrainTestSplitAlignment(Alignment alignment, double train_ratio, Random rnd, Function<Correspondence,?> stratify)

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_owlapi

Methods in de.uni_mannheim.informatik.dws.melt.matching_owlapi that return Alignment

Modifier and Type	Method	Description
Alignment	MatcherPipelineYAAAOwlApi.match(org.semanticweb.owlapi.model.OWLOntology source, org.semanticweb.owlapi.model.OWLOntology target, Alignment inputAlignment, Properties p)
abstract Alignment	MatcherYAAA.match(URL source, URL target, Alignment inputAlignment, Properties properties)	Aligns two ontologies specified via URL, with an input alignment as Alignment object, and returns the mapping of the resulting alignment.
Alignment	MatcherYAAAOwlApi.match(URL source, URL target, Alignment inputAlignment, Properties properties)
abstract Alignment	MatcherYAAAOwlApi.match(org.semanticweb.owlapi.model.OWLOntology source, org.semanticweb.owlapi.model.OWLOntology target, Alignment inputAlignment, Properties p)

Methods in de.uni_mannheim.informatik.dws.melt.matching_owlapi with parameters of type Alignment

Modifier and Type	Method	Description
Alignment	MatcherPipelineYAAAOwlApi.match(org.semanticweb.owlapi.model.OWLOntology source, org.semanticweb.owlapi.model.OWLOntology target, Alignment inputAlignment, Properties p)
abstract Alignment	MatcherYAAA.match(URL source, URL target, Alignment inputAlignment, Properties properties)	Aligns two ontologies specified via URL, with an input alignment as Alignment object, and returns the mapping of the resulting alignment.
Alignment	MatcherYAAAOwlApi.match(URL source, URL target, Alignment inputAlignment, Properties properties)
abstract Alignment	MatcherYAAAOwlApi.match(org.semanticweb.owlapi.model.OWLOntology source, org.semanticweb.owlapi.model.OWLOntology target, Alignment inputAlignment, Properties p)

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_owlapi_matchers

Methods in de.uni_mannheim.informatik.dws.melt.matching_owlapi_matchers that return Alignment

Modifier and Type	Method	Description
static Alignment	AlcomoFilter.alcomoAlignmentToYaaaAlignment(de.uni_mannheim.informatik.dws.alcomo.mapping.Mapping alcomoAlignment)	Mapping from Alcomo Mapping to YAAA's Alignment.
Alignment	AlcomoFilter.match(org.semanticweb.owlapi.model.OWLOntology source, org.semanticweb.owlapi.model.OWLOntology target, Alignment inputAlignment, Properties p)	OwlAPI implementation.

Methods in de.uni_mannheim.informatik.dws.melt.matching_owlapi_matchers with parameters of type Alignment

Modifier and Type	Method	Description
Alignment	AlcomoFilter.match(org.semanticweb.owlapi.model.OWLOntology source, org.semanticweb.owlapi.model.OWLOntology target, Alignment inputAlignment, Properties p)	OwlAPI implementation.
(package private) static String	AlcomoFilter.serializeAlignmentToTemporaryFile(Alignment alignment)	Serialize the alignment to a file and return its path.

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.matching_owlapi_matchers.logmap

Methods in de.uni_mannheim.informatik.dws.melt.matching_owlapi_matchers.logmap that return Alignment

Modifier and Type	Method	Description
Alignment	LogMapRepairFilter.match(org.semanticweb.owlapi.model.OWLOntology source, org.semanticweb.owlapi.model.OWLOntology target, Alignment inputAlignment, Properties p)
static Alignment	LogmapMapping2Alignment.transformAlignment(Set<uk.ac.ox.krr.logmap2.mappings.objects.MappingObjectStr> mappings)
static Alignment	LogmapMapping2Alignment.transformAlignment(Set<uk.ac.ox.krr.logmap2.mappings.objects.MappingObjectStr> subsetOldAlignment, Alignment oldAlignment)	This function is for filtering possibilities.

Methods in de.uni_mannheim.informatik.dws.melt.matching_owlapi_matchers.logmap with parameters of type Alignment

Modifier and Type	Method	Description
Alignment	LogMapRepairFilter.match(org.semanticweb.owlapi.model.OWLOntology source, org.semanticweb.owlapi.model.OWLOntology target, Alignment inputAlignment, Properties p)
static Set<uk.ac.ox.krr.logmap2.mappings.objects.MappingObjectStr>	Alignment2LogmapMapping.transformAlignment(Alignment alignment)
static Set<uk.ac.ox.krr.logmap2.mappings.objects.MappingObjectStr>	Alignment2LogmapMapping.transformAlignment(Alignment alignment, org.semanticweb.owlapi.model.OWLOntology source, org.semanticweb.owlapi.model.OWLOntology target)
static Alignment	LogmapMapping2Alignment.transformAlignment(Set<uk.ac.ox.krr.logmap2.mappings.objects.MappingObjectStr> subsetOldAlignment, Alignment oldAlignment)	This function is for filtering possibilities.

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api

Fields in de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api declared as Alignment

Modifier and Type	Field	Description
private Alignment	AlignmentHandler.alignment

Methods in de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api that return Alignment

Modifier and Type	Method	Description
static Alignment	Alignment.copyExtensionsToAlignment(Alignment sourceAlignment, Alignment targetAlignment)	This method creates a deep copy of targetAlignment and further copies extension values from the sourceAlignment.
static Alignment	Alignment.copyExtensionsToAlignment(Alignment sourceAlignment, Alignment targetAlignment, boolean isOverwriteValues)	This method creates a deep copy of targetAlignment and further copies extension values from the sourceAlignment.
Alignment	Alignment.cut(double threshold)	Returns a new alignment which contains only correspondences above or equal the given threshold (it will not modify the current object).
Alignment	AlignmentHandler.getAlignment()
static Alignment	Alignment.intersection(Alignment alignment_1, Alignment alignment_2)	Create the intersection between the two given alignments.
static Alignment	AlignmentXmlRepair.loadRepairedAlignment(File alignmentFile)	Loads a repaired alignment.
static Alignment	Alignment.parse(File f)	Parse a file and returns the corresponding Alignment object.More options are available when using constructors.
static Alignment	Alignment.parse(InputStream stream)	Parse a stream and returns the corresponding Alignment object.
static Alignment	Alignment.parse(String text)	Parse a text and returns the corresponding Alignment object.
static Alignment	AlignmentParser.parse(File fileToBeParsed)	Parses the given file as alignment.
static Alignment	AlignmentParser.parse(InputStream s)
static Alignment	AlignmentParser.parse(String uri)	Reference the alignment file to be parsed using a String URI.
static Alignment	AlignmentParser.parse(URI uri)	Reference the alignment file to be parsed using a String URI.
static Alignment	AlignmentParser.parse(URL url)
static Alignment	SSSOMParser.parse(InputStream s)
static Alignment	AlignmentParser.parseCSV(File file)	Parse alignment from CSV (comma separated file) with header (source, target, confidence, relation).
static Alignment	AlignmentParser.parseCSVWithoutHeader(File file)	Parse alignment from CSV (comma separated file) without header.
static Alignment	AlignmentParser.parseCSVWithoutHeader(File file, char delimiter)	Parse alignment from CSV (comma separated file) without header.
static Alignment	AlignmentParser.parseFromText(String text)	Parses an alignment based on the textual representation.
static Alignment	AlignmentParser.parseTSV(File file)	Parse alignment from TSV (tab separated file) without header.The columns are source \t target \t confidence \t relation.
Alignment	Alignment.reverse()	Reverse the alignment (switches sources with targets) and adjust(reverse) the relation.
Alignment	Alignment.reverseWithoutRelationChange()	Reverse the alignment (switches sources with targets) and does not change the relation.
Alignment	Alignment.sample(int n)	Returns a random sample of correspondences.
Alignment	Alignment.sample(int n, long seed)	Returns a random sample of correspondences.
Alignment	Alignment.sample(int n, Random rnd)	Returns a random sample of correspondences.
Alignment	Alignment.sampleByFraction(double fraction)	Returns a random sample of correspondences.
Alignment	Alignment.sampleByFraction(double fraction, long seed)	Returns a random sample of correspondences.
Alignment	Alignment.sampleByFraction(double fraction, Random rnd)	Returns a random sample of correspondences.
static Alignment	Alignment.subtraction(Alignment alignment_1, Alignment alignment_2)	Create the subtraction between the two given alignments.
static Alignment	Alignment.switchSourceWithTarget(Alignment alignment)	Deprecated. use function reverse
static Alignment	Alignment.union(Alignment alignment_1, Alignment alignment_2)	Create the union between the two given alignments.

Methods in de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api with parameters of type Alignment

Modifier and Type	Method	Description
static Alignment	Alignment.copyExtensionsToAlignment(Alignment sourceAlignment, Alignment targetAlignment)	This method creates a deep copy of targetAlignment and further copies extension values from the sourceAlignment.
static Alignment	Alignment.copyExtensionsToAlignment(Alignment sourceAlignment, Alignment targetAlignment, boolean isOverwriteValues)	This method creates a deep copy of targetAlignment and further copies extension values from the sourceAlignment.
void	Alignment.copyExtensionsToThisAlignment(Alignment otherAlignment)	Copies extensions from correspondences in the otherAlignment to this alignment.
void	Alignment.copyExtensionsToThisAlignment(Alignment otherAlignment, boolean isOverwriteValues)	Copies extensions from correspondences in the otherAlignment to this alignment.
static List<Correspondence>	Alignment.createOrder(Alignment alignment)	Creates a deterministic order of correspondences.
private static String	AlignmentSerializer.getXmlIntro(Alignment alignment)	XML header.
static Alignment	Alignment.intersection(Alignment alignment_1, Alignment alignment_2)	Create the intersection between the two given alignments.
static void	AlignmentParser.parse(InputStream s, Alignment m)
static String	AlignmentSerializer.serialize(Alignment alignment)	Serializes an alignment as String.
static void	AlignmentSerializer.serialize(Alignment alignment, File file)	Method to write the specified alignment to the specified file in the default XML format.
static void	AlignmentSerializer.serialize(Alignment alignment, OutputStream stream)	Method to write the specified alignment to the specified outputstream in the default XML format.
static String	SSSOMSerializer.serialize(Alignment alignment)	Serializes an alignment as String.
static String	SSSOMSerializer.serialize(Alignment alignment, boolean includeNonSSSOMAttributes)	Serializes an alignment as String.
static void	SSSOMSerializer.serialize(Alignment alignment, File file)	Method to write the specified alignment to the specified file in the SSSOM format.
static void	SSSOMSerializer.serialize(Alignment alignment, OutputStream stream)	Method to write the specified alignment to the specified file in the SSSOM format.
static void	SSSOMSerializer.serialize(Alignment alignment, OutputStream stream, boolean includeNonSSSOMAttributes)	Method to write the specified alignment to the specified file in the SSSOM format.
static void	AlignmentSerializer.serializeToCSV(Alignment alignment, File file)	Method to write the specified alignment to the specified file (in CSV format).
static void	AlignmentSerializer.serializeToCSVWithExtensions(Alignment alignment, File file)	Method to write the specified alignment to the specified file (in CSV format).
static Alignment	Alignment.subtraction(Alignment alignment_1, Alignment alignment_2)	Create the subtraction between the two given alignments.
static Alignment	Alignment.switchSourceWithTarget(Alignment alignment)	Deprecated. use function reverse
static Alignment	Alignment.union(Alignment alignment_1, Alignment alignment_2)	Create the union between the two given alignments.
private static void	SSSOMSerializer.writeMetadata(SSSOMPrefixMap prefixMap, Alignment a, OutputStreamWriter writer, boolean includeNonSSSOMAttributes)

Constructors in de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api with parameters of type Alignment

Modifier	Constructor	Description
	Alignment(Alignment alignment)	Copy constructor which copies all information stores in alignment as well as all correspondences.
	Alignment(Alignment alignment, boolean copyCorrespondences)	Copy constructor which copies all information stores in alignment as well as all correspondences (depending on attribute copyCorrespondences).
	AlignmentHandler(Alignment alignment)	Constructor

Uses of Alignment in de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.typetransformation

Methods in de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.typetransformation that return Alignment

Modifier and Type	Method	Description
Alignment	URL2AlignmentTransformer.transform(URL value, Properties parameters)

Methods in de.uni_mannheim.informatik.dws.melt.yet_another_alignment_api.typetransformation with parameters of type Alignment

Modifier and Type	Method	Description
static URL	Alignment2URLTransformer.serializeAlignmentToTmpDir(Alignment alignment)
URL	Alignment2URLTransformer.transform(Alignment value, Properties parameters)